Problem SOLVED! YAY!
I formatted and reinstalled. I have a couple theories about my troubles.
1. I used File and Setting Transfer Wizard to Copy things from a 32 bit system to a 64 bit system. Perhaps something was transferred that hosed up my OS.
2. (less likely)I installed the OS while my Chipset info was NOT set for AHCI. and I later moved the drive cables and enabled AHCI and installed drivers.
3. Maybe just a hosed up installation that just happened.
So far the system is running well and updating as expected. but it has been only several hours so far.