Hi again. You told me to tell you if I still have any problems, so here I am. I'm having the same problems as before, although I'm a little more confident that the computer is clean.
I ran both avast and Avira, neither found any infections (I then removed Avira). Malwarebytes' found 4 files that it labeled "Security.Hijack". It claims to have successfully quarantined and removed them, and a re-scan found nothing. I've attached the MBAM log in case you're interested in taking a look. Ad-Aware and SuperAntiSpyware found a lot of cookies, but that's all (I've since removed Ad-Aware).
I followed your cleanup instructions, removing all the programs and defragmenting and such. However, the problems I've mentioned previously are still here. I can't use my flash drive in this computer now (and I know it's not a problem with the flash drive, as it works fine in other computers), and the computer hangs at startup. The Windows theme that plays when you log on to an account is delayed by at least 4 or 5 minutes, and during that time, I can't use the task bar, the task manager, or do much of anything.
Obviously, I'm not the expert here, but could the .sys files that avast moved to the virus chest be causing this? If avast is preventing those from running, maybe that could be causing some errors.