Well Technical,its a bit different in your case,because you are 100% sure that those files are virus free (because you made them) 
I think that when files that have been on your PC for a long time (whether you authored them yourself or not) all of a sudden turn up as positive for viruses/trojans, that can mean only one of two things. The most likely is a false positive reading. But the second, I suppose, is a newly discovered (by whitehats) vulnerability that's been in the field for a very long time.
That second scenario is not as likely, but I guess possible. An example of this might be the technical flaw discovered in the unix compression algorithm. If you had created a program using one of the flawed libraries, then a new version of a virus scanner might flag your program as compromised - even if you had been using the same, unmodified component for years.
I also suppose that some benign feature in an application which PREVIOUSLY was not dangerous could become dangerous if an update was made to the underlying operating system that facilitated the ability of an older program to cause havoc.
Too much to consider. I just want my feeling of security back!
