So now my question is: If I start it over again will he still just delete without asking me or will he ask me again if I want it to be moved into the Chest?
That answer (command) was used just for that scanning. In Home (free) version, you need to answer each time you scan.
I am just afraid he is deleting things from my system which I really need.
Please, send files to Chest is safer than directly deleting them. Don't delete directly.
Can you post, at least, the principal files and path of the infected files?
My question is also how can so many infected files go missing to the other scanner?
None if the virus is not replicant. But, generally, you need further procedures to get clean.
I suggest:
1. Disable System Restore and reenable it after step 3.
2. Clean your temporary files.
3. Schedule a boot time scanning with avast with archive scanning turned on.
4. Use
AVG Antispyware;
SUPERantispyware and/or
Spyware Terminator to scan for spywares and trojans. If any infection is detected, better and safer is send the file to Quarantine than to simple delete than.
5. Test your machine with
anti-rootkit applications. I suggest
AVG or
Trend Micro RootkitBuster.
6. Make a
HijackThis log to post here or, better, submit the
RunScanner log to to on-line analysis.
7. Immunize your system with
SpywareBlaster or
Windows Advanced Care.
8. Check if you have insecure applications with
Secunia Software Inspector.
I am sorry if some of my sentences might sound weird but my native language is not english.
We can understand you and your English is pretty good