overblood, as mag suggests, the Windows Virus may now be in the Linux '.vbs' (although they both should be same - Linux and Windows)
We have seen in the past slow downs in the Avast4Linux server, updating the .vbs, which may also be a factor.
mag:
"...I guess it's possible that avast for widows made the detection originally using a non-signature-based technique."
I suspect the Windows scanner uses heuristic techniques, etc., whereas i'm not sure as to the methods of detection of the avast4server scanner, simply the .vbs I believe.
Also, a Linux scanner won't scan protected (root) files, as is the nature of Linux permissions.
Is the Email owned by a 'user', or '/' may be something worth checking ?
If you are having further problems, I suggest contacting Avast.co, as
Avast4Server is a paid for and licensed product.
Good luck,
Abraxas