Werner, I give up on having AT in root mode. Maybe I'm too flasholic to have it uninstalled, boot, installed again all the times. Although it's shown it will survive a ROM OTA flash, it does not. I'm using Slim ROM 4.4.2 and it's being shown it can survive (I can check the option for that). Then, after flashing, AT can't be activated, need to be uninstalled and installed again, all configurated, boot again, etc.
SuperSu has an option to be transformed in a system app and it survives the ROM OTA upgrades with easy and all the times.
Maybe you can create a similar script for AT.