Hi Kingtosser
You're welcome
I am glad that you have managed to sort it out, and it seems to have worked. I can now browse the site without alerts.
That is what is done when sites are hacked...more often than not, many people only notice the one page, and miss the others...so they inject the code into all pages they can...
I would be questioning someone at GoDaddy as to why this so called 'Tech Support' person who was 100% sure that your site wasn't infeted when in fact he was 100% wrong.
Hopefully events like this will prove to some people that even legitimate sites, with no malicous intentions at all can be hacked and be made malicous...overnight...
Kudos to you and the developer for investigating and your persistance
-Scott-