Is it possible that it is Avast! that is causing the problem? Malwarebyte did not find this virus. Apart from Avast! saying that I had a virus, the only other indication was that I was unable to get into Windows Explorer through the shortcut which is at the bottom of the page on Windows 7. When I tried to do it, it said that it couldn't because there was a virus. However while I was following your instructions, I disabled Avast! and it went into Windows Explorer from the short cut with no problem. Also I typed in explorer.exe through task manager and it went into it, though it wouldn't when I had the Avast! working.
I followed your instructions as far as I could. In the first part with the OTL file, I am not sure if it completed it because I got a message saying there was a serious error and windows closed down. I did not try running it again. I am enclosing the text file from when I ran the virus scan in OTL. For some reason there was only one file which I am enclosing. I then downloaded ComboFix and tried to run it. It said it was running and task manager said it was running but nothing happened. I left it for about 30 minutes hoping something would come up but nothing did.
Should I try reinstalling Avast!?