ok, tried that and rebooted but got the Windows Boot Manager Screen saying that windows failed to start and asking me to insert my installation disc the error messages are as follows
File: \Boot\Bcd
Status: 0x0000098
Info: The windows boot configuration data file does not contain a valid OS entry
Ithink it repaired my boot sector but didnt put it with the same partition that my OS is on , if that makes sense?