Bit odd, this. Absolutely no problems with the program until I updated it to 6.0.1367, and now the shields keep deactivating until I reactivate. I first noticed when I woke my computer from sleep mode, and just now after doing a general boot scan of my system once again they were off. From sleep mode they wouldn't switch back on until I restarted my computer, from boot scan they did.
The problem is not my computer for two reasons - first of all I've done comprehensive scans with avast! (after switching the shields back on), SUPERAntiSpyware, Malwarebytes, Spybot and Microsoft Security Essentials, all clean, and secondly (and most importantly) as stated, there was no issue prior to the update, and as SOON as I've updated it's began happening. Very annoying.
As far as I can see if I don't use sleep mode/boot scans and the like and just load my computer normally there's no issue.