I'm sorry but I can't see any element of confusion... everything is separated as it should be. If you meant on first sliding panel (Resident Scanner), that is maybe too close to Program Menu tab... well, that sliding panel is not there anyway. It shows up only when you invoke that action with the button. Anyway, of course we have to count with confusion, especially if you work on that small area... I didn't want to make another huge skin. We should always think of those who still use 800x600 pixels resolution.
All those elements fits exactly as they should considering that small working area. Btw, the screenshot you just posted is not the latest one. I redesigned all those fonts and some orderings. Take a look at latest screenshoot I posted in that thread...
Edit: Also, nothing can be perfect and it's not quite good if it's 100% symmetric...